Genotyping of human papillomavirus in triaging of low-grade cervical cytology




Objective


The objective of the study was to evaluate whether typing of human papillomavirus (HPV) among women with low-grade cervical cytology can improve the ability to identify women with cervical cancer or cervical intraepithelial neoplasia grade III (CIN III or worse).


Study Design


A total of 1595 women with low-grade cervical cytology participating in a randomized implementation trial of HPV triaging using Hybrid Capture II were also HPV genotyped and CIN III or worse predictive values evaluated.


Results


HPV 16 was detected in 57% of cases with CIN III or worse but only among 24% of all tested women. Testing for the 3 HPV types with highest risk (HPV16/31/33) detected 77% of CIN III or worse, with 36% of women testing positive. Positivity for the other high-risk HPV types had a decreased risk for CIN III or worse.


Conclusion


Different high-risk HPV types confer different risks for the presence of CIN III or worse, implying that HPV genotyping could be useful for the optimization of triaging strategies.


Women with cervical intraepithelial lesions that confer an increased risk of cervical cancer are identified by cytological screening. Policies for follow-up after finding atypical squamous cells of undetermined significance (ASCUS) or low-grade squamous intraepithelial lesion (LSIL) in cytology vary from repeat cytology to immediate referral for colposcopy and biopsy. Referral of all women with ASCUS/LSIL in cytology to the colposcopy clinic and the subsequent histological examination yields substantial costs for the health care system and often creates feelings of anxiety and discomfort for the women concerned.


Given the key etiological role of oncogenic human papillomavirus (HPV) infections in the development of cervical cancer, HPV testing is useful as a triage method to select women at increased risk of cervical cancer, thus justifying referral for colposcopic exploration. A major 3-way randomized trial comparing HPV triaging, repeat cytology, and colposcopy of all women found that repeat cytology was inferior for managing ASCUS smears and that HPV triaging and colposcopy of all women were equivalent in terms of safety.


The Hybrid Capture II method (HCII) is 1 of only 2 HPV testing methods approved by the US Food and Drug Administration. The HCII contains cocktails of type-specific probes, 1 low-risk (LR) mix and 1 high-risk (HR) mix containing 13 different HPV so-called high-risk HPV types. HCII does not provide information regarding the specific HPV type. Because different so-called high-risk types have substantially different risks for cervical intraepithelial neoplasia grade III (CIN III) and cancer, HPV genotyping should be relevant for HPV triaging. We have compared the key test performance indices of an HPV test without typing (HCII) to test results for specific HPV types obtained using general primer polymerase chain reaction (PCR) with general primers (GP) 5+/6+ primers followed by bead-based multiplex-genotyping on the Luminex platform.


Materials and Methods


Study design


In Sweden, all women aged 23-49 years are invited for cervical cancer screening at 3 year intervals and women aged 50-60 years at 5 year intervals. All women who are residents in Stockholm County, Sweden, who on their invitational smear had the cytological diagnoses ASCUS or LSIL between March 17, 2003, and Jan. 16, 2006, were included in a randomized health care policy as previously described, which was approved by the Ethical Review Board in Stockholm.


Sweden uses the old North American cytological terminology in which CIN grade I (CIN I) is also used as a cytological diagnosis. This corresponds closely to the LSIL in modern terminology and CIN I in cytology has therefore been substituted for LSIL throughout this paper. The policies compared were the referral of all women with ASCUS or LSIL for colposcopy and biopsy (previous policy) and HPV-based triaging referring all women with ASCUS or LSIL for a new visit with HPV testing using HCII.


All 15 obstetrics-gynecology clinics in Stockholm County were randomized to either colposcopy of all women (1567 women with ASCUS/LSIL) or to HPV triaging (1752 women with ASCUS/LSIL).


The present study focuses on the women randomized to the HPV triaging arm, in which 1600 samples could be analyzed with HCII. We extended the HPV testing to also include HPV typing of these samples. Because 5 samples were missing, we obtained HPV typing data on 1595 samples. The mean age of the women was 33 years (minimum 23 years, maximum 61 years). The HCII-positive women (n = 1154) were referred for a colposcopy-directed biopsy, and the HCII-negative women (n = 441) were referred for repeat cytology 12 months later. In the HPV triaging arm, a total of 1917 colposcopies were performed and 2766 biopsies were obtained. All histopathologies were interpreted on a routine practice basis.


HPV DNA testing


At enrollment, all samples were tested by HCII (Qiagen, Hilden, Germany), a pool-probe, signal amplification deoxyribonucleic acid (DNA) test that targets a group of 13 high-risk HPV genotypes (HPV 16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, and 68). HCII does not provide information on the specific genotypes present. The samples were taken using the HCII DNA specimen collection kit (according to the manufacturer’s instructions) and stored frozen in specimen transport medium (STM). HCII was performed according to the manufacturer’s instructions.


DNA extraction


DNA from the samples stored in STM buffer were extracted using sodium dodecyl sulfate (SDS)/proteinase K. One hundred fifty microliters of lysis buffer (10 mM Tris-HCl, 10 mM NaCl, 10 mM EDTA, 4% SDS at pH 7.8) with the addition of 4% proteinase K was added to 50 μl of each sample and incubated at 37°C overnight. After the addition of 75 μL saturated NH 4 Ac, the samples were centrifuged for 15 min at 16000 × g , the supernatant was transferred to a new tube, and the DNA was precipitated with 450 μL of absolute ethanol at –20°C for 30 minutes followed by 5 minutes of centrifugation at 16,000 × g . The DNA pellet was washed once with 250 μL 70 % ethanol, the dry pellet was dissolved in TE buffer (10 mM Tris-HCl, 0.1 mM EDTA at pH 8.0) and stored at –20°C until analysis.


HPV DNA genotyping


PCR using the general primer pair GP 5+/bioGP 6+, was performed as previously described. Briefly, 1 μL of extracted DNA was added to the PCR master mix in a final volume of 25 μL. The PCR was performed in an Eppendorf Mastercycler epgradient (Eppendorf, Denmark), the first step at 94°C for 10 minutes was followed by 45 cycles of denaturing at 94°C for 1.5 minutes, annealing at 50°C for 2.0 seconds, and 40°C for 1.5 minutes, with a 7% ramp between 50°C and 40°C of 0.2°C/second, an extension step at 72°C for 2 minutes, and a terminal extension step at 72°C for 4 minutes. Positive controls were 10-fold dilutions, 1-0.01 ng/μL, of HPV 16 DNA purified from SiHa cells in TE buffer (10 mM Tris-HCl, 0.1 mM EDTA, 10 ng/μl human placenta DNA, pH 8.0).


HPV detection and genotyping was performed using multiplex bead–based hybridization with Luminex technology as described by Schmitt et al. The probes for the HPV types 6, 11, 16, 18, 31, 33, 35, 39, 42, 43, 45, 51, 52, 56, 58, 59, 66, 68, 70, 73, and 82 and an HPV 35 variant sequence (5′-CTG CTG TGT CTA CTA GTG A-3′) were used. The cutoff for positivity was set individually for each included HPV type to 2 times the mean mean fluorescent intensity of 12 negative water controls tested on each 96 well plate.


The samples were tested for amplifiability by real-time PCR amplification of the human β-globin gene as previously described using 0.2 μM of modified PCO 3 and PCO 4 primers (PCO 3 14-39F: 5′-ACACAACTGTGTTCACTAGCAACCTC-3′, PCO 4 123-103R: 5′-CCAACTTCATCCACGTTCACCT-3′) and 0.04 μM Taqman probe (β-globin 55-85: 5′-FAM-TGCACCTGACTCCTGAGGAGAAGTCTGC-TAMRA-3′) and 5 μL of sample in a 25 μL reaction.


Statistical analysis


Odds ratios (ORs) with 95% confidence intervals (CIs) were calculated using binomial logistic regression using the software R version 2.7.2 ( www.r-project.com ).




Results


Altogether 1154 of 1595 women were HPV positive by HCII, whereas the PCR-based genotyping method found 1148 of 1595 women positive for any HR type and 140 of 1595 positive for an LR type (not tested for by HCII) ( Table 1 ). The sensitivities for cervical intraepithelial neoplasia grade II (CIN II) or worse and CIN III or worse in histopathology were 97.1% and 97.8% with HCII, respectively, and 95.0% and 96.1% with PCR, respectively ( Table 1 ). The few cases of CIN II or worse and CIN III or worse who were positive in HCII but not in PCR for the 14 HR types all contained LR HPV types (data not shown).



TABLE 1

HPV genotyping of 1595 women with ASCUS/LSIL in cytology, in comparison with subsequent CIN II or worse or CIN III or worse in histopathology



















































































































































































































HPV Positive women, n (%) Patients with CIN II or worse, n Patients with CIN III or worse, n Sensitivity CIN II or worse, % Sensitivity CIN III or worse, % PPV CIN II or worse, % PPV CIN III or worse, %
16 380 (23.8) 162 103 42.2 57.2 42.6 27.1
18 135 (8.5) 40 13 10.4 7.2 29.6 9.6
31 158 (9.9) 69 31 17.9 17.2 43.6 19.6
33 90 (5.6) 40 17 10.4 9.4 44.4 18.9
35 62 (3.9) 23 10 5.9 5.5 37.1 16.1
39 62 (3.9) 11 4 2.8 2.2 17.7 6.4
45 90 (5.6) 31 11 8.0 6.1 34.4 12.2
51 89 (5.6) 26 9 6.8 5.0 29.2 10.1
52 94 (5.9) 28 5 7.3 2.7 29.8 5.3
56 142 (8.9) 36 14 9.4 7.7 25.3 9.9
58 60 (3.8) 20 13 5.2 7.2 33.3 21.7
59 123 (7.7) 30 10 7.8 5.5 24.4 8.1
66 123 (7.7) 25 8 6.5 4.4 20.3 6.5
68 11 (0.7) 0 0 0 0 0 0
16/18 484 (30.3) 188 109 48.9 60.5 38.8 22.5
16/31/33 579 (36.3) 246 138 64.0 76.7 42.5 23.8
16/18/31/33 670 (42.0) 268 143 69.8 79.4 40.0 21.3
Other high-risk types 473 (29.7) 97 30 25.2 16.7 20.5 6.3
Any high-risk type 1148 (72.0) 365 173 95.0 96.1 31.8 15.1
Low-risk types 140 (8.8) 8 2 2.0 1.1 5.7 1.4
HCII 1154 (72.4) 373 176 97.1 97.8 32.3 15.2
No triaging 1595 (100.0) 384 180 100.0 100.0 24.1 11.3

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Jun 5, 2017 | Posted by in GYNECOLOGY | Comments Off on Genotyping of human papillomavirus in triaging of low-grade cervical cytology

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