23 Infectious Diseases and Immunizations
Pathogenesis of Infectious Diseases
Bacteria are the dominant life form on earth and are found virtually everywhere in the environment. They are often controlled by viruses. Humans become colonized with bacteria on the skin and mucosal surfaces (including the upper respiratory and gastrointestinal tracts) shortly after birth. These bacteria are generally harmless and may be beneficial because many normal flora can minimize colonization by potentially pathogenic organisms (Table 23-1). Infectious agents cause disease when the balance between harmless colonization and protective immunity is disrupted in favor of harmful proliferation of a microorganism. Dangerous viruses are rare, fortunately, because of their inability to meet all three criteria at once: inflicting serious harm, going unrecognized by the immune system, and being able to efficiently spread.
Bacterium | Very Commonly or Commonly Found in These Locations | Notes |
---|---|---|
Aerobic Bacteria | ||
Gram Positive | ||
Staphylococcus aureus | Skin, hair, naso-oropharynx, lower GI, cerumen | Rarely found in the vagina and conjunctiva; trachea, bronchi, lungs, and sinuses are normally sterile; has potential for being a pathogen New study shows that high levels of MRSA bacteria in the nose are indicative of MRSA colonization in the axilla, groin, perineum; if screening cultures are done, culturing the nose will produce reliable results of colonization in other areas (Mermel et al, 2011) |
Staphylococcus epidermidis | Skin, hair, naso-oropharynx, adult vagina, urethra, conjunctiva, ear (including cerumen), lower GI | Occasionally found in the vagina of prepubertal females; found in low numbers in “normal” urine, probably as result of contamination from urethra and skin areas |
Streptococci | Skin, hair, naso-oropharynx, lower GI, cerumen, mouth, nasal passages, nasopharynx | Occasionally found in urethra and conjunctiva; group B uncommonly found in oropharynx and postpubertal vagina |
Skin, conjunctiva, nasopharynx; less commonly in adult vagina and urethra | Uncommon in GI tract | |
Mouth; less common in pharynx | Has the potential of being a pathogen | |
Nasopharynx, mouth; rarely found in conjunctiva, ear, vagina | Has the potential of being a pathogen | |
Mouth, pharynx; rarely skin, conjunctiva, ear, adult vagina | Has the potential for being a pathogen | |
Nasopharynx, mouth, skin | ||
Bifidobacterium bifidum | Lower GI | |
Enterococcus faecalis | Lower GI, postpubertal vagina; occasionally found in mouth, urethra | Rarely found in pharynx; has potential of being a pathogen |
Propionibacterium acnes | Skin | |
Gram Negative | ||
Acinetobacter johnsonii | Skin, urethra, adult vagina | |
Corynebacterium | Skin, cerumen, naso-oropharynx, mouth, lower GI, urethra, adult vagina | |
Citrobacter diversus | Lower GI | |
Enterobacter | Lower GI, prepubertal vagina, mouth, axillary area | Has the potential of being a pathogen |
Escherichia coli | Lower GI, vagina, mouth, urethra | Has the potential of being a pathogen |
Haemophilus influenzae | Nasopharynx, but not commonly; rarely conjunctiva, ear | Has the potential of being a pathogen |
Kingella kingae (formerly referred to as Moraxella kingae) | Pharynx | Has the potential of being a pathogen (cause of invasive infections in young children) |
Klebsiella pneumoniae | Nose, colon, axillary area | |
Lactobacillus spp. | Pharynx, mouth, lower GI, adult vagina | |
Moraxella catarrhalis | Nasopharynx | |
Morganella morganii | Lower GI | |
Mycobacterium spp. | Skin, lower GI, urethra; rarely nasopharynx, mouth | |
Mycoplasma | Mouth, naso-oropharynx, lower GI, vagina; rarely urethra | |
Neisseria spp. (e.g., N. mucosa) | Nasopharynx (90%-100% of population); less commonly in conjunctiva, mouth, urethra, vagina | N. meningitidis occurs in nearly 100% of the population as normal flora in the pharynx; less commonly in nose, mouth, vagina; N. meningitidis has the potential for being a pathogen |
Proteus spp. | Lower GI, vagina, skin, nasopharynx, mouth | |
Pseudomonas aeruginosa | Lower GI, but not commonly; rarely in pharynx, mouth, urethra; lungs of patients with cystic fibrosis (CF) | Has the potential of being a pathogen |
Anaerobic Bacteria | ||
Bacteroides spp. | Lower GI, urethra; rarely adult vagina | Has the potential of being a pathogen |
Clostridium spp. | Lower GI; rarely mouth | Less commonly found in adult vagina, skin; can be found in small numbers in urine, but is probably a contaminant. Has the potential for being a pathogen. |
Streptococcus spp | Mouth, colon, adult vagina | |
Spirochetes (a distinct form of bacteria) | Pharynx, mouth, lower GI | |
Fungi | ||
Actinomycetes spp. | Pharynx, mouth | |
Candida albicans | Skin, conjunctiva, mouth, lower GI, adult vagina | Can be found in voided urine, but is a contaminant |
Cryptococcus spp. | Skin | |
Protozoa | Mouth, lower GI, adult vagina | |
Viruses | The role of viruses as normal flora is undetermined. |
GI, Gastrointestinal; MRSA, methicillin-resistant Staphylococcus aureus.
∗ Normal microflora in humans consist of indigenous microorganisms that colonize human body tissues and live in a mutualistic state without producing disease. An individual’s microflora depends on genetics, age, sex, stress, nutrition, and diet. A pathogen is a microorganism (or virus) than can produce disease. Normal flora can become pathogens when a host is compromised or weakened (endogenous pathogen); other microorganisms can invade a host during times of disease only (obligate pathogens) or lowered resistance (opportunistic pathogens). More than 200 species of bacteria are known to comprise the normal microflora. Skin microflora can also include yeast (Malassezia furfur), molds (Trichophyton mentagrophytes var. interdigitale), and mites (Demodex folliculorum). The spinal fluid, blood, urine, and tissues are normally sterile; the cervix is normally sterile, but can demonstrate flora similar to those in the upper area of the vagina. Antibiotics can have a minor to major effect on the microflora (e.g., ampicillin has a major effect; erythromycin a moderate effect; and sulfonamides and penicillins have minor effects).
Data from Burton GR, Engelkirk PG: Microbiology for the health sciences, ed 5, Philadelphia, 1996, Lippincott Williams & Wilkins, p 177; Mikat DM, Mikat KW: A clinician’s dictionary guide to bacteria and fungi, ed 4 (revised), 1983, distributed by Eli Lilly and Company, pp 60-64; Mermel LA, Cartony JM, Covington P, et al: Methicillin-resistant Staphylococcus aureus (MRSA) colonization at different body sites: a prospective, quanititative analysis, J Clin Microbiol 2011 Jan 5. [Epub ahead of print]; Tannock GW, editor: Medical importance of the normal microflora, Boston, 1999, Kluwer Academic Publishers, pp 3-5; Todar K: The normal bacteria flora. In Todar, K, editor: Todar’s online textbook of bacteriology, 2008. Available at www.textbookofbacteriology.net/normalflora.html (accessed Dec 12, 2010).
Clinical Findings
History
• The history of present illness with a careful analysis of the presenting symptoms. When did the symptoms start? What other symptoms were associated with the illness? Were there periods when the patient seemed improved or even back to normal? Details about the presenting history are critically important and can help narrow the differential diagnosis from a broad list of possibilities. As an example, fever is most commonly associated with infectious illnesses, but also occurs with rheumatologic or oncologic diseases.
• A comprehensive past medical history. Careful questioning makes certain diagnoses more or less likely. A history of asthma in a teenager with fever and cough, for example, is suspicious of atypical pneumonia. Determine place of birth.
• Current and recent medications. Recent antibiotic use may affect the provider’s ability to interpret negative culture results or be important information to know in the case of methicillin-resistant Staphylococcus aureus (MRSA) tissue infection. Include any nonprescription, herbal, or natural health products that may have recently been used.
• Immunizations. Adherence to recommended vaccine schedules (including age and spacing of vaccines) is an important consideration if the child’s symptoms suggest a disease usually prevented by vaccines.
• Family history, particularly regarding infectious illness. Important information includes a history of any relative (first or second degree) with a known immune deficiency, with numerous infections or difficulty recovering from infections, or with a history of recurrent miscarriages. Any of these may raise suspicion for an immune deficiency. A strong history of autoimmune disease in the family may suggest possible rheumatologic diagnoses as opposed to an infectious process.
• Social history. Attendance at daycare or school or living in a crowded setting is associated with increased exposure to viral infections. A history of travel to areas with endemic illnesses is important to elicit (e.g., area endemic for Lyme disease, malaria, or parasitic illnesses). A sexual history obtained under confidential conditions is very important for accurate assessment of the adolescent and for males who have sex with males.
• Exposure history, including any known contacts with individuals with similar symptoms. In addition to suggesting a presentation consistent with epidemic illness (e.g., as occurs with viruses, such as influenza or enterovirus), a comprehensive, in-depth exposure history can provide important clues in diagnosis of infections that might otherwise not be considered. Specific questions include any contact with individuals with known illnesses or at high risk for certain illnesses, such as tuberculosis (TB) or human immunodeficiency virus (HIV) or contact with animals or animal by-products (e.g., hides, waste, blood). Other exposures of importance include environmental tobacco smoke or mold.
• Complete review of symptoms. Some presenting features of the illness may be discounted or forgotten by parents or patients and are recalled only when direct questions are asked.
• Diet history. Any ingestion of raw milk or undercooked or raw meats and/or fish; history of pica.
Physical Examination
Physical findings that may be encountered with infectious diseases include:
• Abnormal vital signs (e.g., fever, tachypnea, low blood pressure [concerning for dehydration and/or septic shock]).
• Irritability is nonspecific in ill children, but may raise concern for meningitis or Kawasaki disease. Lethargy raises concern for meningitis (particularly in infants and younger children).
• A stiff or painful neck (suggestive of meningitis).
• A new murmur (may herald the possibility of endocarditis or rheumatic fever).
• Refusal to walk (can be a manifestation of deep tissue infections [e.g., pyomyositis], osteomyelitis, septic arthritis, or meningitis).
• Skin or mucous membrane changes (exanthema or enanthema, respectively) are common with viral illness, and characteristic rashes are typically associated with specific illnesses (e.g., chickenpox).
Diagnostic Aids
Laboratory Studies
• The quality of the specimen sent to the lab strongly affects the reliability of the results. For example, pus aspirated from a skin infection is generally more likely to grow the pathogen of concern than is a surface swab and has the added advantage of allowing the specimen to undergo a Gram stain. The collection site of the microbiologic specimen needs to be appropriately cleansed to minimize possible skin contamination.
• The timing of sample collection affects the degree to which the results help in diagnosis. Bacterial cultures collected after the administration of antibiotics may remain negative, even with active infection. Acute and convalescent titers or certain blood chemistries can help in a diagnosis or monitor response to treatment.
• The amount of any specimen can affect the laboratory’s ability to process the sample correctly.
• Microbiologic samples can require special handling and should be transported to the laboratory promptly. The laboratory should be contacted if there is any question regarding the collection and transport of samples.
• Be prepared to prioritize test requests when only a limited quantity of specimen can be collected.
Complete Blood Count
A complete blood count (CBC) provides information on the relative amount of different cell types in the circulation. From an infectious disease standpoint, the white blood cell (WBC) count is generally the most useful piece of information obtained from the CBC. It is often elevated (leukocytosis) in bacterial infections and may be decreased (leukopenia) in some viral infections. A differential WBC count is often obtained along with a CBC; bacterial infections often (but not always) cause increases in the neutrophil (or polymorphonuclear cell) count and may cause an elevation in bands (immature neutrophils). Normal values for total white cell count and the differential vary with age (see Appendix C, Table C-1). Medications may also commonly affect the WBC count. Steroids can increase the white count, for example, and the long-term use of certain medications can decrease the white count. The clinical state of the patient may also need to be considered in the interpretation of the white count (e.g., overwhelming bacterial sepsis can lead to decreased WBCs).
C-Reactive Protein
Inflammatory processes other than infection may lead to an elevated CRP, including trauma, rheumatologic diseases, and oncologic diseases. Persistent elevations of CRP may be related to adiposity (Puder et al, 2010). Of note, different laboratories may report CRP in different units (usually either mg/L or mg/dL; 10 mg/L equals 1 mg/dL).
General Management Strategies
Preventing the Spread of Infection
Specific guidance that should be given to children and parents includes:
• Hands should be washed after using the bathroom, before meals, and before preparing foods. The proper technique includes scrubbing with soap and water for at least 20 seconds (the time it takes to sing “Happy Birthday” twice), rinsing with warm water, and drying completely.
• Avoiding finger-nose and finger-eye contact, particularly if exposed to someone with a cold.
• Using a tissue to cover the mouth and nose when coughing or sneezing may help prevent the spread of pathogens. If a tissue is unavailable, the upper sleeve should be used (not the hands).
Use of Antibiotics
It is generally known that antibiotics are often prescribed for conditions that do not require their use and that such inappropriate prescribing patterns are likely to contribute to the emergence of resistant bacteria. The CDC has a task force dedicated to tracking the emergence of drug-resistant pathogens and preventing their spread (www.cdc.gov/drugresistance/actionplan/taskforce). One of the risk factors associated with inappropriate prescriptions in children is pressure from the parents to prescribe antibiotics. Providers are encouraged to educate patients and parents about the role and efficacy of antibiotics and to assume a more “targeted therapy” approach when prescribing. The CDC provides brochures, posters, and information sheets that may be helpful in explaining the importance of judicious use of antibiotics. Knowledge about emerging resistance patterns, local epidemiology, and susceptibility patterns of bacterial agents within their practice communities will better arm the provider to appropriately prescribe. An unexpected benefit found from the flu vaccine has been that the number of antibiotic prescriptions written for respiratory infections has decreased. This in turn ultimately has resulted in lowered overall rates of antibiotic-resistant bacteria (Kwong et al, 2009).
Prevention of Infection Through the Use of Vaccines
Barriers to Vaccination
Primary care providers are frequently faced with immunization issues: shortages of vaccines, vaccine refusal, vaccine schedule changes, and unique immunization needs of special populations. Shortages of vaccine have resulted from manufacturing pitfalls. Recent efforts by the U.S. Department of Health and Human Services (USDHHS) include increasing manufacturing capacity to respond to both seasonal and pandemic influenza vaccines by securing adequate egg supplies year-round; providing better guidance for and contracts with vaccine manufacturers; and focusing on cell-based vaccines. In cases of shortages, the CDC provides tiered guidelines for priority administration.
Some helpful points to keep in mind when discussing immunizations with parents include (Amer, 2009):
• Listen: Understand that parents may not use the same decision-making processes that medical providers use.
• Be familiar with common myths regarding the dangers of vaccines and be prepared to address them. Inform concerned parents that all childhood vaccines are available in thimerosal-free forms.
• Be honest and respectful when discussing the known risks and benefits of vaccination and attempt to correct misperceptions or misinformation.
• Emphasize the balance between risks and benefits of vaccination and that the risk associated with disease is far greater than the risk of a serious adverse vaccine reaction.
• Provide parents with printed educational materials from a reliable source, such as the local health department, and encourage parents to visit reputable websites for more information (e.g., the Immunization Action Coalition, the National Network for Immunization Information, the CDC, and the American Academy of Pediatrics [AAP]).
Some medical providers have explored the option of dismissing patients from their practice because of parental refusal of vaccinations. Dismissal may adversely affect access to care and health outcomes for a child (Phillips, 2010). Over time, with subsequent visits, the opportunity for education, the development of respectful communication and an ongoing relationship may help parents to reconsider their choices about immunization. When parents decline immunization it is important to document vaccine discussions and ask parents to sign a vaccine refusal form (available at www.cispimmunize.org/pro/pdf/RefusaltoVaccinate_2pageform.pdf). The AAP discourages patient dismissal but supports it when there is a substantial level of distrust, notable differences in the philosophy about care, or poor communication between provider and patient or family. Advanced notice is requisite (Diekema and AAP Committee on Bioethics, 2005).
Vaccine Shortages
The Vaccine Management Business Improvement Project is in charge of addressing all problems related to vaccine shortages including vaccine procurement, ordering, distribution, and management. In addition, federal legislative proposals are underway to ensure federal-private sector partnerships to provide necessary incentives and protections to quickly bring additional and better vaccines to market. Ongoing information regarding vaccine shortages and expected procurement data are available at the National Center for Immunization and Respiratory Disease website (www.cdc.gov/vaccines/vac-gen/shortages).
Medical providers should develop their own tracking system to recall patients whose vaccinations were delayed because of supply shortages. During such times providers should check with the websites of AAP, ACIP, and National Immunization Program recommendations regarding vaccine deferrals, prioritization of high-risk children, and suspensions of school and childcare entry requirements.
Vaccine Safety and Resources for Providers
The National Childhood Vaccine Injury Act also requires health care providers to report vaccine-related adverse events that occur after immunization so that unexpected patterns and safety concerns can be addressed. The suspected events are to be reported to the USDHHS Vaccine Adverse Event Reporting System (VAERS), using their standard confidential form. Information on which vaccine-associated injuries are reportable as well as official report forms can be downloaded from www.vaers.hhs.gov or from the U.S. Food and Drug Administration (FDA) website.